ORCHIDEE - Historial de revisiones

Lluis.fita: /* Benchmark */

2026-04-15T17:21:55Z

Benchmark

← Revisión anterior		Revisión del 17:21 15 abr 2026
Línea 204:		Línea 204:
	> ATM_CO2 = _AUTO_: DEFAULT = 350.		> ATM_CO2 = _AUTO_: DEFAULT = 350.
	33,36c33,36		33,36c33,36
	< LIMIT_WEST=-5		< LIMIT_WEST=-75
	< LIMIT_NORTH=5		< LIMIT_NORTH=-20
	< LIMIT_SOUTH=40		< LIMIT_SOUTH=-40
	< LIMIT_EAST=55		< LIMIT_EAST=-55
	---		---
	> #LIMIT_WEST=8		> #LIMIT_WEST=8

Lluis.fita: /* Benchmark */

2026-04-15T13:35:17Z

Benchmark

← Revisión anterior		Revisión del 13:35 15 abr 2026
Línea 286:		Línea 286:
	cp /share/ORCHIDEE/launch_orchidee.pbs ./		cp /share/ORCHIDEE/launch_orchidee.pbs ./
	</pre>		</pre>

			Getting the compiled version of orchidee
			<PRE type="shell">
			ln -s /share/ORCHIDEE/trunk/modipsl/bin/orchideedriver_prod ./orchideedriver
			</PRE>

	Launching		Launching

Lluis.fita: /* Benchmark */

2026-04-15T13:33:59Z

Benchmark

← Revisión anterior		Revisión del 13:33 15 abr 2026
Línea 212:		Línea 212:
	> #LIMIT_NORTH=48		> #LIMIT_NORTH=48
	> #LIMIT_SOUTH=46		> #LIMIT_SOUTH=46
	> #LIMIT_EAST=10		> #LIMIT_EAST=103
			8,39d37
			< START_DATE = 2000-01-01 00:00:00
			< END_DATE = 2000-01-02 00:00:00
	</pre>		</pre>

Lluis.fita: /* multiple file output */

2026-04-07T17:32:33Z

multiple file output

← Revisión anterior		Revisión del 17:32 7 abr 2026
Línea 557:		Línea 557:

	=== multiple file output ===		=== multiple file output ===
			In case we run without XIOS, each processor will produce an output file. We need to use the <code>rebuild</code> utility for that

	~~In case we run without XIOS, each processor will produce an output file. We need to use the <code>rebuild</code> utility for that~~
	<pre style="shell">		<pre style="shell">
	sechiba_history_[nnnn].nc, sechiba_interp_diag_[nnnn].nc, stomate_history_[nnnn].nc, stomate_history_4dim_[nnnn].nc		sechiba_history_[nnnn].nc, sechiba_interp_diag_[nnnn].nc, stomate_history_[nnnn].nc, stomate_history_4dim_[nnnn].nc

Lluis.fita: /* multiple file output */

2026-04-07T17:32:07Z

multiple file output

← Revisión anterior		Revisión del 17:32 7 abr 2026
Línea 557:		Línea 557:

	=== multiple file output ===		=== multiple file output ===

	In case we run without XIOS, each processor will produce an output file. We need to use the <code>rebuild</code> utility for that		In case we run without XIOS, each processor will produce an output file. We need to use the <code>rebuild</code> utility for that
	<pre style="~~sell~~">		<pre style="shell">
	sechiba_history_[nnnn].nc, sechiba_interp_diag_[nnnn].nc, stomate_history_[nnnn].nc, stomate_history_4dim_[nnnn].nc		sechiba_history_[nnnn].nc, sechiba_interp_diag_[nnnn].nc, stomate_history_[nnnn].nc, stomate_history_4dim_[nnnn].nc
	$ /share/ORCHIDEE/modipsl/modeles/IOIPSL/bin/rebuild -h		$ /share/ORCHIDEE/modipsl/modeles/IOIPSL/bin/rebuild -h

Lluis.fita: /* Model description */

2026-04-07T15:25:09Z

Model description

← Revisión anterior		Revisión del 15:25 7 abr 2026
Línea 10:		Línea 10:
	All forcing data to run ORCHIDEE is located here in CIMA's HPC:		All forcing data to run ORCHIDEE is located here in CIMA's HPC:
	<pre>		<pre>
	${ORforcing}=/share/DATA/ORCHIDEE/IGCM/		${ORforcing}=/share/DATA/ORCHIDEE/IGCM/SRF
	</pre>		</pre>

Daira.rosales: /* Test: let's look at Marcos Juárez, Córdoba, Argentina */

2025-03-21T20:02:48Z

Test: let's look at Marcos Juárez, Córdoba, Argentina

← Revisión anterior		Revisión del 20:02 21 mar 2025
Línea 463:		Línea 463:

	Linking the routing data-base		Linking the routing data-base
	<pre>ln -s ${ORforcing}~~/SRF~~/routing.nc ./</pre>		<pre>ln -s ${ORforcing}/routing.nc ./</pre>

	Linking the topographical slope		Linking the topographical slope
	<pre>ln -s ${ORforcing}~~/SRF~~/cartepente2d_15min.nc ./</pre>		<pre>ln -s ${ORforcing}/cartepente2d_15min.nc ./</pre>

	Initial temperature of the soil		Initial temperature of the soil
Línea 472:		Línea 472:

	Linking the morphological files		Linking the morphological files
	<pre>ln -s ${ORforcing}~~/SRF~~/SOIL/soils_param_zobler.nc ./soils_param.nc		<pre>ln -s ${ORforcing}/SOIL/soils_param_zobler.nc ./soils_param.nc
	ln -s $ORforcing~~/SRF~~/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_1980.nc ./PFTmap.nc		ln -s ${ORforcing}/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_1980.nc ./PFTmap.nc
	ln -s /share/DATA/ORCHIDEE/IGCM/SRF/SOIL/soil_bulk_and_ph.nc ./		ln -s /share/DATA/ORCHIDEE/IGCM/SRF/SOIL/soil_bulk_and_ph.nc ./
	</pre>		</pre>

Lluis.fita: /* Test: let's look at Marcos Juárez, Córdoba, Argentina */

2025-03-07T15:55:36Z

Test: let's look at Marcos Juárez, Córdoba, Argentina

← Revisión anterior		Revisión del 15:55 7 mar 2025
Línea 477:		Línea 477:
	</pre>		</pre>

	Linking the files related with the Nitrogen's cycle (with <code>R_IN=/share/ORCHIDEE/IGCM/</code>)		Linking the files related with the Nitrogen's cycle (with <code>R_IN=/share/ORCHIDEE/IGCM/, simYR=2001</code>)
	<pre type="shell">		<pre type="shell">
	ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/~~Nfer_pasture_2001~~.nc ./nfer_pasture.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_${simYR}.nc ./nfer_pasture.nc
	ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/~~Nfer_cropland_2001~~.nc ./nfer_cropland.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_${simYR}.nc ./nfer_cropland.nc
	ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/~~Nmanure_pasture_2001~~.nc ./nmanure_pasture.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_${simYR}.nc ./nmanure_pasture.nc
	ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/~~Nmanure_cropland_2001~~.nc ./~~nmanure_cropland_2001~~.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_${simYR}.nc ./nmanure_cropland_${simYR}.nc
	ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/~~CCMI_ndep_nhx_2001~~.nc ./ndep_nhx.nc		ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_${simYR}.nc ./ndep_nhx.nc
	ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/~~CCMI_ndep_noy_2001~~.nc ./ndep_noy.nc		ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_${simYR}.nc ./ndep_noy.nc
	ln -s ${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc ./bnf.nc		ln -s ${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc ./bnf.nc
			ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CMIP6.2/historical/nhx__${simYR}.nc ./Nammonium.nc
			ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CMIP6.2/historical/noy__${simYR}.nc ./Nnitrate.nc
			ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_crop_nh4_${simYR}.nc ./Nfert_ammo_cropland.nc
			ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_pas_nh4_${simYR}.nc ./Nfert_ammo_pasture.nc
			ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_crop_no3_${simYR}.nc ./Nfert_nitr_cropland.nc
			ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_pas_no3_${simYR}.nc ./Nfert_nitr_pasture.nc
	</pre>		</pre>

Lluis.fita: /* Test: let's look at Marcos Juárez, Córdoba, Argentina */

2025-03-07T15:42:19Z

Test: let's look at Marcos Juárez, Córdoba, Argentina

Lluis.fita: /* Test: let's look at Marcos Juárez, Córdoba, Argentina */

2025-03-07T15:41:33Z

Test: let's look at Marcos Juárez, Córdoba, Argentina

← Revisión anterior		Revisión del 15:41 7 mar 2025
Línea 477:		Línea 477:
	</pre>		</pre>

	Linking the files related with the Nitrogen's cycle		Linking the files related with the Nitrogen's cycle (with <code>R_IN=/share/ORCHIDEE/IGCM/</code>)
	<pre type="shell">		<pre type="shell">
	$ ln -s ~~/share/DATA/ORCHIDEE/IGCM~~/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_2001.nc ./nfer_pasture.nc		$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_2001.nc ./nfer_pasture.nc
	$ ln -s ~~/share/DATA/ORCHIDEE/IGCM~~/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_2001.nc ./nfer_cropland.nc		$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_2001.nc ./nfer_cropland.nc
	$ ln -s ~~/share/DATA/ORCHIDEE/IGCM~~/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_2001.nc ./nmanure_pasture.nc		$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_2001.nc ./nmanure_pasture.nc
	$ ln -s ~~/share/DATA/ORCHIDEE/IGCM~~/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_2001.nc ./nmanure_cropland_2001.nc		$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_2001.nc ./nmanure_cropland_2001.nc
	$ ln -s ~~/share/DATA/ORCHIDEE/IGCM~~/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_2001.nc ./ndep_nhx.nc		$ ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_2001.nc ./ndep_nhx.nc
	$ ln -s ~~/share/DATA/ORCHIDEE/IGCM~~/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_2001.nc ./ndep_noy.nc		$ ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_2001.nc ./ndep_noy.nc
	$ ln -s ~~/share/DATA/ORCHIDEE/IGCM~~/SRF/NITROGEN/BNF/bnf_1850.nc ./bnf.nc		$ ln -s ${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc ./bnf.nc
	</pre>		</pre>

← Revisión anterior		Revisión del 15:42 7 mar 2025
Línea 457:		Línea 457:
	Linking atomspheric forcing files (0.5° WFDE5 CRU GPCC v1 files)		Linking atomspheric forcing files (0.5° WFDE5 CRU GPCC v1 files)
	<pre>		<pre>
	$ ln -s ${ORforcing}/METEO/WFDE5_CRU_GPCC/v1/WFDE5_CRU_GPCC_2000.nc ./forcing_yearm1.nc		ln -s ${ORforcing}/METEO/WFDE5_CRU_GPCC/v1/WFDE5_CRU_GPCC_2000.nc ./forcing_yearm1.nc
	$ ln -s ${ORforcing}/METEO/WFDE5_CRU_GPCC/v1/WFDE5_CRU_GPCC_2001.nc ./forcing_year.nc		ln -s ${ORforcing}/METEO/WFDE5_CRU_GPCC/v1/WFDE5_CRU_GPCC_2001.nc ./forcing_year.nc
	$ ln -s ${ORforcing}/METEO/WFDE5_CRU_GPCC/v1/WFDE5_CRU_GPCC_2002.nc ./forcing_yearp1.nc		ln -s ${ORforcing}/METEO/WFDE5_CRU_GPCC/v1/WFDE5_CRU_GPCC_2002.nc ./forcing_yearp1.nc
	</pre>		</pre>

	Linking the routing data-base		Linking the routing data-base
	<pre>$ ln -s ${ORforcing}/SRF/routing.nc ./</pre>		<pre>ln -s ${ORforcing}/SRF/routing.nc ./</pre>

	Linking the topographical slope		Linking the topographical slope
	<pre>$ ln -s ${ORforcing}/SRF/cartepente2d_15min.nc ./</pre>		<pre>ln -s ${ORforcing}/SRF/cartepente2d_15min.nc ./</pre>

	Initial temperature of the soil		Initial temperature of the soil
Línea 472:		Línea 472:

	Linking the morphological files		Linking the morphological files
	<pre>$ ln -s ${ORforcing}/SRF/SOIL/soils_param_zobler.nc ./soils_param.nc		<pre>ln -s ${ORforcing}/SRF/SOIL/soils_param_zobler.nc ./soils_param.nc
	$ ln -s $ORforcing/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_1980.nc ./PFTmap.nc		ln -s $ORforcing/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_1980.nc ./PFTmap.nc
	$ ln -s /share/DATA/ORCHIDEE/IGCM/SRF/SOIL/soil_bulk_and_ph.nc ./		ln -s /share/DATA/ORCHIDEE/IGCM/SRF/SOIL/soil_bulk_and_ph.nc ./
	</pre>		</pre>

	Linking the files related with the Nitrogen's cycle (with <code>R_IN=/share/ORCHIDEE/IGCM/</code>)		Linking the files related with the Nitrogen's cycle (with <code>R_IN=/share/ORCHIDEE/IGCM/</code>)
	<pre type="shell">		<pre type="shell">
	$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_2001.nc ./nfer_pasture.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_2001.nc ./nfer_pasture.nc
	$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_2001.nc ./nfer_cropland.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_2001.nc ./nfer_cropland.nc
	$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_2001.nc ./nmanure_pasture.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_2001.nc ./nmanure_pasture.nc
	$ ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_2001.nc ./nmanure_cropland_2001.nc		ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_2001.nc ./nmanure_cropland_2001.nc
	$ ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_2001.nc ./ndep_nhx.nc		ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_2001.nc ./ndep_nhx.nc
	$ ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_2001.nc ./ndep_noy.nc		ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_2001.nc ./ndep_noy.nc
	$ ln -s ${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc ./bnf.nc		ln -s ${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc ./bnf.nc
	</pre>		</pre>

	Getting the XIOS files (they might be version-dependant, therfore, it is recommended to get them directly from the same folder where the compiled version of ORCHIDEE is located, INSTALLDIR=/share/ORCHIDEE/)		Getting the XIOS files (they might be version-dependant, therfore, it is recommended to get them directly from the same folder where the compiled version of ORCHIDEE is located, INSTALLDIR=/share/ORCHIDEE/)
	<pre>$ cp $INSTALLDIR/modipsl/modeles/ORCHIDEE/src_xml/*xml ./</pre>		<pre>cp $INSTALLDIR/modipsl/modeles/ORCHIDEE/src_xml/*xml ./</pre>

	Edit the <code>file_def_orchidee.xml</code> to define output frequency and level of of output (remove all the <code>_AUTO_</code>)		Edit the <code>file_def_orchidee.xml</code> to define output frequency and level of of output (remove all the <code>_AUTO_</code>)
	<pre>$ vim file_def_orchidee.xml</pre>		<pre>vim file_def_orchidee.xml</pre>

	The final configuration gets:		The final configuration gets: