ORcompHYDRA hydra - Historial de revisiones

Lluis.fita en 13:56 6 mar 2023

2023-03-06T13:56:09Z

← Revisión anterior		Revisión del 13:56 6 mar 2023
Línea 1:		Línea 1:
	Compilation at CIMA's HPC 'hydra'		Compilation at CIMA's HPC 'hydra'

			CIMA's cluster named hydra, has the following compiler:
			<pre>
			fortran: intel v 2021.4.0
			mpi: 3.4.2
			</pre>

	= Installation steps using modipsl =		= Installation steps using modipsl =

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T15:41:31Z

Instalation steps using modipsl

← Revisión anterior		Revisión del 15:41 3 feb 2023
Línea 425:		Línea 425:
	$ cat -n run_compile.log \| grep undefined		$ cat -n run_compile.log \| grep undefined
	$ ls ../../bin/		$ ls ../../bin/
	~~orchidee_ol~~ ~~xios_server~~.exe</pre>		orchideedriver_debug orchidee_ol_debug xios_server_debug.exe
			</pre>

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T14:53:23Z

Instalation steps using modipsl

← Revisión anterior		Revisión del 14:53 3 feb 2023
Línea 419:		Línea 419:
	$ cd ../config/ORCHIDEE_OL		$ cd ../config/ORCHIDEE_OL
	$ ./compile_orchidee_ol.sh -netcdf_lib_seq -arch ifort_HYDRA -debug >& run_compile.log		$ ./compile_orchidee_ol.sh -netcdf_lib_seq -arch ifort_HYDRA -debug >& run_compile.log

	</pre>		</pre>



	Checking if everything went fine:		Checking if everything went fine:
	<pre>$ cat -n ~~run_gmake~~.log \| grep Error		<pre>$ cat -n run_compile.log \| grep Error
	$ cat -n ~~run_gmake~~.log \| grep undefined		$ cat -n run_compile.log \| grep undefined
	$ ls ../../bin/		$ ls ../../bin/
	orchidee_ol xios_server.exe</pre>		orchidee_ol xios_server.exe</pre>

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T14:52:42Z

Instalation steps using modipsl

← Revisión anterior		Revisión del 14:52 3 feb 2023
Línea 416:		Línea 416:

	Compiling:		Compiling:
	<pre>$ ~~gmake~~ >& ~~run_gmake~~.log</pre>		<pre>
			$ cd ../config/ORCHIDEE_OL
			$ ./compile_orchidee_ol.sh -netcdf_lib_seq -arch ifort_HYDRA -debug >& run_compile.log

			</pre>



	Checking if everything went fine:		Checking if everything went fine:

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T14:49:52Z

Instalation steps using modipsl

← Revisión anterior		Revisión del 14:49 3 feb 2023
Línea 400:		Línea 400:

	Everything is the same as for the installation, except that we need to indicate debugging compilation:		Everything is the same as for the installation, except that we need to indicate debugging compilation:
	<pre>./ins_make -t ~~ifort_hydra~~ -d >& run_ins_make.log</pre>		<pre>./ins_make -t ifort_HYDRA -d >& run_ins_make.log</pre>
	* And on <code>Makefile</code> from <code>config/ORCHIDEE_OL</code>, change all the <code>-prod</code> by <code>-debug</code>
			<!--And on <code>Makefile</code> from <code>config/ORCHIDEE_OL</code>, change all the <code>-prod</code> by <code>-debug</code>
	<pre>(...)		<pre>(...)
	xios :		xios :
Línea 412:		Línea 413:
	driver_xios :		driver_xios :
	(cd ../../modeles/ORCHIDEE ; ./makeorchidee_fcm -xios2 -j 8 -parallel mpi -debug -arch ${FCM_ARCH} -driver ; )		(cd ../../modeles/ORCHIDEE ; ./makeorchidee_fcm -xios2 -j 8 -parallel mpi -debug -arch ${FCM_ARCH} -driver ; )
	(...)</pre>		(...)</pre-->
	* Compiling:
			Compiling:
	<pre>$ gmake >& run_gmake.log</pre>		<pre>$ gmake >& run_gmake.log</pre>
	* Checking if everything went fine:
			Checking if everything went fine:
	<pre>$ cat -n run_gmake.log \| grep Error		<pre>$ cat -n run_gmake.log \| grep Error
	$ cat -n run_gmake.log \| grep undefined		$ cat -n run_gmake.log \| grep undefined
	$ ls ../../bin/		$ ls ../../bin/
	orchidee_ol xios_server.exe</pre>		orchidee_ol xios_server.exe</pre>

Lluis.fita: /* arch-ifort_HYDRA.env */

2023-02-03T14:43:45Z

arch-ifort_HYDRA.env

← Revisión anterior		Revisión del 14:43 3 feb 2023
Línea 299:		Línea 299:
	<pre>		<pre>
	$ cp ARCH/arch-ifort_CICLAD.env ARCH/arch-ifort_HYDRA.env		$ cp ARCH/arch-ifort_CICLAD.env ARCH/arch-ifort_HYDRA.env
			</pre>

			== Compilation ==

			Going there:
			<pre>
			cd ../config/ORCHIDEE_OL/
	</pre>		</pre>

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T14:42:03Z

Instalation steps using modipsl

← Revisión anterior		Revisión del 14:42 3 feb 2023
Línea 385:		Línea 385:
	Getting all the environment files for each component (from the regular compilation)		Getting all the environment files for each component (from the regular compilation)

	<pre>$ cp ../../modipsl/util/AA_make.gdef ./		<pre style="shell">$ cp AA_make.gdef AA_make.gdef.old
	$ cp ../../modipsl/modeles/~~XIOS~~/arch/~~hydra~~ ../modeles/~~XIOS~~/arch/		$ cp ../../modipsl/util/AA_make.gdef ./
	$ cp ../../modipsl/modeles/ORCHIDEE/arch/~~hydra~~ ../modeles/ORCHIDEE/arch/</pre>		$ cp ../../modipsl/modeles/IOIPSL/arch/arch-HYDRA ../modeles/IOIPSL/arch/
			$ cp ../../modipsl/modeles/ORCHIDEE/arch/arch-HYDRA ../modeles/ORCHIDEE/arch/
			$ cp ../../modipsl/modeles/XIOS/arch/arch-HYDRA ../modeles/XIOS/arch/
			</pre>

	Everything is the same as for the installation, except that we need to indicate debugging compilation:		Everything is the same as for the installation, except that we need to indicate debugging compilation:

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T14:36:33Z

Instalation steps using modipsl

← Revisión anterior		Revisión del 14:36 3 feb 2023
Línea 377:		Línea 377:
	<pre>$ ./model ORCHIDEE_trunk >& run_get_model.log</pre>		<pre>$ ./model ORCHIDEE_trunk >& run_get_model.log</pre>

	We ~~got some issues with the ports, thus, it needs to be manually done~~:		We should have:
	<pre>$ cd ../modeles</pre>		<pre>
			$ ls ../modeles
			IOIPSL ORCHIDEE XIOS
			</pre>

			Getting all the environment files for each component (from the regular compilation)

	~~Once we got the codes, we need to copy the specificities of the installation for <code>hydra</code>~~
	<pre>$ cp ../../modipsl/util/AA_make.gdef ./		<pre>$ cp ../../modipsl/util/AA_make.gdef ./
	$ cp ../../modipsl/modeles/XIOS/arch/hydra ../modeles/XIOS/arch/		$ cp ../../modipsl/modeles/XIOS/arch/hydra ../modeles/XIOS/arch/

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T14:29:55Z

Instalation steps using modipsl

@@ Línea 370: / Línea 370: @@
 $ svn co --username icmc_users https://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl_dbg
 </pre>
 Once we got the codes, we need to copy the specificities of the installation for <code>hydra</code>

Lluis.fita: /* Instalation steps using modipsl */

2023-02-03T14:28:20Z

Instalation steps using modipsl

← Revisión anterior		Revisión del 14:28 3 feb 2023
Línea 363:		Línea 363:

	== Instalation steps using modipsl ==		== Instalation steps using modipsl ==
	* Go to the instalation directory <code>[INSTALLDIR]</code> (<code>/share</code> in <code>hydra</code>)		Go to the instalation directory <code>[INSTALLDIR]</code> (<code>/share/ORCHIDEE</code> in <code>hydra</code>)
	<pre>$ cd [INSTALLDIR]</pre>		<pre>$ cd [INSTALLDIR]</pre>
	* Getting the IPSL-models suite (r 3379)
	<pre>$ svn co https://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl_dbg</pre>		Getting the IPSL-models suite (r 3379)
	* Once we got the codes, we need to copy the specificities of the installation for <code>hydra</code>		<pre>
			$ svn co --username icmc_users https://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl_dbg
			</pre>

			Once we got the codes, we need to copy the specificities of the installation for <code>hydra</code>
	<pre>$ cp ../../modipsl/util/AA_make.gdef ./		<pre>$ cp ../../modipsl/util/AA_make.gdef ./
	$ cp ../../modipsl/modeles/XIOS/arch/hydra ../modeles/XIOS/arch/		$ cp ../../modipsl/modeles/XIOS/arch/hydra ../modeles/XIOS/arch/
	$ cp ../../modipsl/modeles/ORCHIDEE/arch/hydra ../modeles/ORCHIDEE/arch/</pre>		$ cp ../../modipsl/modeles/ORCHIDEE/arch/hydra ../modeles/ORCHIDEE/arch/</pre>
	* Everything is the same as for the installation, except that we need to indicate debugging compilation:

			Everything is the same as for the installation, except that we need to indicate debugging compilation:
	<pre>./ins_make -t ifort_hydra -d >& run_ins_make.log</pre>		<pre>./ins_make -t ifort_hydra -d >& run_ins_make.log</pre>
	* And on <code>Makefile</code> from <code>config/ORCHIDEE_OL</code>, change all the <code>-prod</code> by <code>-debug</code>		* And on <code>Makefile</code> from <code>config/ORCHIDEE_OL</code>, change all the <code>-prod</code> by <code>-debug</code>