runORDCAO - Historial de revisiones

Lluis.fita: /* Stop simulations */

2019-07-24T17:49:01Z

Stop simulations

← Revisión anterior		Revisión del 17:49 24 jul 2019
Línea 159:		Línea 159:
	adminis+ 20742 3619 0 13:54 pts/18 00:00:00 grep --color=auto multi		adminis+ 20742 3619 0 13:54 pts/18 00:00:00 grep --color=auto multi
	$ kill -9 18795		$ kill -9 18795
			</PRE>
			Or far more drastic
			<PRE>
			$ killall run_multi-or_1proc.bash
	</PRE>		</PRE>

Lluis.fita: /* Getting forcings */

2019-07-23T18:37:09Z

Getting forcings

← Revisión anterior		Revisión del 18:37 23 jul 2019
Línea 60:		Línea 60:
	# Ohter ancillary data (to be located from <code>forcings/IGCM/SRF</code>)		# Ohter ancillary data (to be located from <code>forcings/IGCM/SRF</code>)
	<PRE>		<PRE>
	mkdir PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/		mkdir -p PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/
	cd PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/		cd PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/
	wget -r -nH --cut-dirs=11 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_1990.nc		wget -r -nH --cut-dirs=11 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_1990.nc
	mkdir WOODHARVEST/LUH2v2/historical4		mkdir -p WOODHARVEST/LUH2v2/historical4
	cd WOODHARVEST/LUH2v2/historical4		cd WOODHARVEST/LUH2v2/historical4
	wget -r -nH --cut-dirs=9 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/WOODHARVEST/LUH2v2/historical4/woodharvest_1990.nc		wget -r -nH --cut-dirs=9 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/WOODHARVEST/LUH2v2/historical4/woodharvest_1990.nc

Lluis.fita: /* Getting all atmospheric forcings */

2019-07-23T17:03:16Z

Getting all atmospheric forcings

← Revisión anterior		Revisión del 17:03 23 jul 2019
Línea 150:		Línea 150:
	tail orout/1990/out_orchidee_0000		tail orout/1990/out_orchidee_0000
	tail orout/1990/run_or.log		tail orout/1990/run_or.log
			</PRE>

			= Stop simulations =
			Because model is running in 'background' one should get the PID in the example (18795) of the process:
			<PRE>
			$ ps -ef \| grep multi
			adminis+ 18795 3560 0 12:17 pts/4 00:00:00 /bin/bash ./run_multi-or_1proc.bash
			adminis+ 20742 3619 0 13:54 pts/18 00:00:00 grep --color=auto multi
			$ kill -9 18795
	</PRE>		</PRE>

Lluis.fita: /* Getting forcings */

2019-07-23T12:03:34Z

Getting forcings

← Revisión anterior		Revisión del 12:03 23 jul 2019
Línea 58:		Línea 58:
	wget -r -nH --cut-dirs=6 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/reftemp.nc		wget -r -nH --cut-dirs=6 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/reftemp.nc
	</PRE>		</PRE>
	# Ohter ancillary data		# Ohter ancillary data (to be located from <code>forcings/IGCM/SRF</code>)
	<PRE>		<PRE>
	mkdir PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/		mkdir PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/

Lluis.fita: /* Running ORCHIDEE */

2019-07-23T12:02:45Z

Running ORCHIDEE

← Revisión anterior		Revisión del 12:02 23 jul 2019
Línea 152:		Línea 152:
	</PRE>		</PRE>

	# Getting all atmospheric forcings		= Getting all atmospheric forcings =
			Now we can complete to download all the forcings

	<PRE>		<PRE>
	wget -r ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings		cd forcings/
			wget -r -nH --cut-dirs=4 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/ATMOS
	</PRE>		</PRE>

Lluis.fita: /* Running ORCHIDEE */

2019-07-23T12:01:33Z

Running ORCHIDEE

← Revisión anterior		Revisión del 12:01 23 jul 2019
Línea 85:		Línea 85:
	cd test		cd test
	</PRE>		</PRE>
	# copying the configuration file and ~~linkning~~ the running script		# copying the configuration file and linking the running script
	<PRE>		<PRE>
	cp ~/installOR/components/shell/or_1-proc.config ./		cp ~/installOR/components/shell/or_1-proc.config ./
Línea 120:		Línea 120:
	</PRE>		</PRE>

	# Running it		# Running it (running in background to liberate the terminal to check the correct running of the model)
	<PRE>		<PRE>
	nohup ./run_multi-or_1proc.bash >& run_multi_or_1proc.log &		nohup ./run_multi-or_1proc.bash >& run_multi_or_1proc.log &
	</PRE>		</PRE>

	# When finished one should have (~~among others~~)		# In order to know if the simulation is running, at the [WORKDIR] should appear the output files and them being growing in size.

			# When finished one should have into the <code>orout</code> folder another folder for each simulated year (in this case only 1990) with:
			* <code>sechiba_history_0000.nc</code>: output for the SECHIBA module
			* <code>stomate_history_0000.nc</code>: output for the STOMATE module
			* <code>sechiba_rest_out.nc</code>: restart for the SECHIBA module
			* <code>stomate_rest_out.nc</code>: restart for the STOMATE module
			* <code>out_orchidee_0000</code>: standard output from ORCHIDEE
			* <code>run_or.log</code>: standard output from the execution of the model
			* <code>run.def</code>: configuration of ORCHIDEE
			* <code>used_run.def</code>: full configuration (including default parameters unset in run.def) of ORCHIDEE
			* <code>rebuild.bash</code>: bash script to join multiple files (not used, only useful for multi-process runs)

			# In order to know if a simulation has successfully finished, we should have more than 1 time-step in the outputs of each component (SECHIBA, STOMATE)
			<PRE>
			ncdump -h orout/1990/sechiba_history_0000.nc \| grep time_counter \| grep UNLIMITED
			time_counter = UNLIMITED ; // (365 currently)
			ncdump -h orout/1990/stomate_history_0000.nc \| grep time_counter \| grep UNLIMITED
			time_counter = UNLIMITED ; // (36 currently)
			</PRE>

			# If something when wrong, one should check for messages (usually at the end)
	<PRE>		<PRE>
	orout/1990/~~sechiba_histout_0000.nc~~		tail orout/1990/out_orchidee_0000
	orout/1990/~~stomate_histout_0000~~.nc		tail orout/1990/run_or.log
	</PRE>		</PRE>

	# Getting forcings		# Getting all atmospheric forcings
	<PRE>		<PRE>
	wget -r ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings		wget -r ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings
	</PRE>		</PRE>

Lluis.fita: /* Running ORCHIDEE */

2019-07-22T19:34:28Z

Running ORCHIDEE

← Revisión anterior		Revisión del 19:34 22 jul 2019
Línea 105:		Línea 105:

	# Anciliary data 1 file without year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen])		# Anciliary data 1 file without year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen])
	filestolink=IGCM/SRF/albedo@alb_bg_modisopt_2D_ESA_v3.nc@alb_bg.nc:IGCM/SRF@cartepente2d_15min.nc@cartepente2d_15min.nc:IGCM/SRF/SOIL@soil_bulk_and_ph.nc@soil_bulk_and_ph.nc:IGCM/SRF@soils_param.nc@soils_param.nc		filestolink=IGCM/SRF/albedo@alb_bg_modisopt_2D_ESA_v3.nc@alb_bg.nc:IGCM/SRF@cartepente2d_15min.nc@cartepente2d_15min.nc:IGCM/SRF/SOIL@soil_bulk_and_ph.nc@soil_bulk_and_ph.nc:IGCM/SRF@soils_param.nc@soils_param.nc:IGCM/SRF@reftemp.nc@reftemp.nc

	# Anciliary data 1 file with year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen], [YYYY] to be changed by the correspondant year)		# Anciliary data 1 file with year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen], [YYYY] to be changed by the correspondant year)

Lluis.fita: /* Getting forcings */

2019-07-22T19:33:45Z

Getting forcings

← Revisión anterior		Revisión del 19:33 22 jul 2019
Línea 56:		Línea 56:
	wget -r -nH --cut-dirs=6 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/cartepente2d_15min.nc		wget -r -nH --cut-dirs=6 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/cartepente2d_15min.nc
	wget -r -nH --cut-dirs=6 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/soils_param.nc		wget -r -nH --cut-dirs=6 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/soils_param.nc
			wget -r -nH --cut-dirs=6 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/reftemp.nc
	</PRE>		</PRE>
	# Ohter ancillary data		# Ohter ancillary data

Lluis.fita: /* Getting forcings */

2019-07-22T19:24:47Z

Getting forcings

← Revisión anterior		Revisión del 19:24 22 jul 2019
Línea 68:		Línea 68:
	wget -r -nH --cut-dirs=7 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/SOIL/		wget -r -nH --cut-dirs=7 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/SOIL/
	soil_bulk_and_ph.nc		soil_bulk_and_ph.nc
			mkdir albedo
			wget -r -nH --cut-dirs=7 ftp://ftp.cima.fcen.uba.ar/lluis.fita/Curso_InteraccionSueloAtmosfera/TPs/forcings/IGCM/SRF/albedo/alb_bg_modisopt_2D_ESA_v3.nc
	</PRE>		</PRE>

Lluis.fita: /* Running ORCHIDEE */

2019-07-22T19:18:57Z

Running ORCHIDEE

← Revisión anterior		Revisión del 19:18 22 jul 2019
Línea 102:		Línea 102:

	# Anciliary data 1 file without year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen])		# Anciliary data 1 file without year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen])
	filestolink=IGCM/SRF/albedo@alb_bg_modisopt_2D_ESA_v3.nc@alb_bg.nc:IGCM/SRF@cartepente2d_15min.nc@cartepente2d_15min~~.nc:IGCM/SRF@reftemp.nc@reftemp.nc:IGCM/SRF@routing.nc@routing~~.nc:IGCM/SRF/SOIL@soil_bulk_and_ph.nc@soil_bulk_and_ph.nc:IGCM/SRF@soils_param.nc@soils_param.nc		filestolink=IGCM/SRF/albedo@alb_bg_modisopt_2D_ESA_v3.nc@alb_bg.nc:IGCM/SRF@cartepente2d_15min.nc@cartepente2d_15min.nc:IGCM/SRF/SOIL@soil_bulk_and_ph.nc@soil_bulk_and_ph.nc:IGCM/SRF@soils_param.nc@soils_param.nc

	# Anciliary data 1 file with year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen], [YYYY] to be changed by the correspondant year)		# Anciliary data 1 file with year (original name of the files with the ancilliary data [folderName, since ${forcings}]@[origFilen]@[ORfilen], [YYYY] to be changed by the correspondant year)