anaconda

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CIMA's ciomputational resources have conda installed. This facilitates the individualized management of, for example, python
  
CIMA's ciomputational resources have conda installed. This facilitates the individualized management of, for example, python
  +
  +
= Install =
  +
In case you want to install (in any other machine!)
  +
# Getting to the downloads folder
  +
<pre>
  +
$ mkdir Downloads
  +
$ cd Downloads
  +
</pre>
  +
# Getting the installer for python 2.7
  +
<pre>
  +
wget https://repo.continuum.io/archive/Anaconda2-4.4.0-Linux-x86_64.sh
  +
</pre>
  +
# Execution of the installer
  +
<pre>
  +
$ bash Anaconda2-4.4.0-Linux-x86_64.sh
  +
(...)
  +
install path: /home/lluis.fita/bin/anaconda2
  +
(...)
  +
Do you wish the installer to prepend the Anaconda2 install location
  +
to PATH in your /home/lluis.fita/.bashrc ? [yes|no]
  +
>>> no
  +
You may wish to edit your .bashrc or prepend the Anaconda2 install location:
  +
$ export PATH=/home/lluis.fita/bin/anaconda2/bin:$PATH
  +
Thank you for installing Anaconda2!
  +
Share your notebooks and packages on Anaconda Cloud!
  +
</pre>
  +
# Anaconda’s python as:
  +
<pre>
  +
$ /home/lluis.fita/bin/anaconda2/bin/python
  +
Python 2.7.13 |Anaconda 4.4.0 (64-bit)| (default, Dec 20 2016, 23:09:15)
  +
[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)4] on linux2
  +
Type "help", "copyright", "credits" or "license" for more information.
  +
Anaconda is brought to you by Continuum Analytics.
  +
Please check out: http://continuum.io/thanks and https://anaconda.org
  +
</pre>
  +
  +
== Installing packages ==
  +
Steps to follow to install a package
  +
# Let’s install netcdf4
  +
<pre>
  +
$ ${HOME}/bin/anaconda2/bin/conda install netcdf4
  +
Fetching package metadata .........
  +
Solving package specifications: .
  +
Package plan for installation in environment /home/lluis.fita/bin/anaconda2:
  +
The following NEW packages will be INSTALLED:
  +
hdf4: 4.2.12-1
  +
libnetcdf: 4.4.1-1
  +
netcdf4: 1.2.4-np112py27_0
  +
The following packages will be UPDATED:
  +
anaconda: 4.4.0-np112py27_0 –> custom-py27_0
  +
conda: 4.3.21-py27_0 –> 4.3.22-py27_0
  +
The following packages will be DOWNGRADED:
  +
curl: 7.52.1-0 –> 7.49.0-1
  +
pycurl: 7.43.0-py27_2 –> 7.43.0-py27_0
  +
Proceed ([y]/n)? y
  +
</pre>
   
 
= cration of an environtment =
  
= cration of an environtment =
−
A python environtment is useful to have set-up an specific set of packages to be used for python. Folowing instructions from conda [ https://conda.io/docs/user-guide/tasks/manage-environmentshtml#creating-an-environment-with-commands EnvironmentCreation]
 +
A python environtment is useful to have set-up an specific set of packages to be used for python. Folowing instructions from conda [https://conda.io/docs/user-guide/tasks/manage-environments.html EnvironmentCreation]
   
 
# Creation of the environemnt called ‘lluis’ with ptyhon 2.7 version of codes
  
# Creation of the environemnt called ‘lluis’ with ptyhon 2.7 version of codes
 
<pre>
  
<pre>
−
conda create –name lluis lluis python=2.7
 +
conda create --name lluis python=2.7
 
</pre>
  
</pre>
 
# To activate the environment
  
# To activate the environment
 
<pre>
  
<pre>
−
$ source activate lluis
 +
$ source ~/bin/anaconda2/bin/activate lluis
 
(lluis) $
  
(lluis) $
 
</pre>
  
</pre>
Línea 34: Línea 90:
 
<pre>
  
<pre>
 
$ pip install numpy
  
$ pip install numpy
  +
</pre>
  +
# Deactivate environtment:
  +
<pre>
  +
(lluis) $ source ~/bin/anaconda2/bin/deactivate
  +
$
 
</pre>
  
</pre>

Última revisión de 17:55 19 nov 2018

CIMA's ciomputational resources have conda installed. This facilitates the individualized management of, for example, python

[editar] Install

In case you want to install (in any other machine!)

  1. Getting to the downloads folder 
$ mkdir Downloads
$ cd Downloads
  1. Getting the installer for python 2.7 
wget https://repo.continuum.io/archive/Anaconda2-4.4.0-Linux-x86_64.sh
  1. Execution of the installer 
$ bash Anaconda2-4.4.0-Linux-x86_64.sh
(...)
install path: /home/lluis.fita/bin/anaconda2
(...)
Do you wish the installer to prepend the Anaconda2 install location
to PATH in your /home/lluis.fita/.bashrc ? [yes|no]
>>> no
You may wish to edit your .bashrc or prepend the Anaconda2 install location:
$ export PATH=/home/lluis.fita/bin/anaconda2/bin:$PATH
Thank you for installing Anaconda2!
Share your notebooks and packages on Anaconda Cloud!
  1. Anaconda’s python as: 
$ /home/lluis.fita/bin/anaconda2/bin/python
Python 2.7.13 |Anaconda 4.4.0 (64-bit)| (default, Dec 20 2016, 23:09:15)
[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)4] on linux2
Type "help", "copyright", "credits" or "license" for more information.
Anaconda is brought to you by Continuum Analytics.
Please check out: http://continuum.io/thanks and https://anaconda.org

[editar] Installing packages

Steps to follow to install a package

  1. Let’s install netcdf4 
$ ${HOME}/bin/anaconda2/bin/conda install netcdf4
Fetching package metadata .........
Solving package specifications: .
Package plan for installation in environment /home/lluis.fita/bin/anaconda2:
The following NEW packages will be INSTALLED:
hdf4: 4.2.12-1
libnetcdf: 4.4.1-1
netcdf4: 1.2.4-np112py27_0
The following packages will be UPDATED:
anaconda: 4.4.0-np112py27_0 –> custom-py27_0
conda: 4.3.21-py27_0 –> 4.3.22-py27_0
The following packages will be DOWNGRADED:
curl: 7.52.1-0 –> 7.49.0-1
pycurl: 7.43.0-py27_2 –> 7.43.0-py27_0
Proceed ([y]/n)? y

[editar] cration of an environtment

A python environtment is useful to have set-up an specific set of packages to be used for python. Folowing instructions from conda EnvironmentCreation

  1. Creation of the environemnt called ‘lluis’ with ptyhon 2.7 version of codes 
conda create --name lluis python=2.7
  1. To activate the environment 
$ source ~/bin/anaconda2/bin/activate lluis
(lluis) $
  1. Knowing packages of the environtment: 
$ conda list -n lluis
# packages in environment at /home/lluis.fita/datosskogul/minconda3/envs/lluis:
#
ca-certificates           2017.7.27.1                   0    conda-forge
certifi                   2017.7.27.1              py27_0    conda-forge
ncurses                   5.9                          10    conda-forge
openssl                   1.0.2l                        0    conda-forge
pip                       9.0.1                    py27_0    conda-forge
python                    2.7.14                        0    conda-forge
readline                  6.2                           0    conda-forge
setuptools                36.6.0                   py27_1    conda-forge
sqlite                    3.13.0                        1    conda-forge
tk                        8.5.19                        2    conda-forge
wheel                     0.30.0                     py_1    conda-forge
zlib                      1.2.8                         3    conda-forge
  1. To install a pakage (assuming pip is already in the environtment!): 
$ pip install numpy
  1. Deactivate environtment: 
(lluis) $ source ~/bin/anaconda2/bin/deactivate
$
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