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(→Instalación de ESMValTool en papa-deimos) |
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Se siguen los pasos encontrados en esta página [https://github.com/ESMValGroup/ESMValTool-JupyterLab ESMValTool-JupyterLab]. |
Se siguen los pasos encontrados en esta página [https://github.com/ESMValGroup/ESMValTool-JupyterLab ESMValTool-JupyterLab]. |
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| + | <PRE style="shell"> |
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| + | # cd /opt/conda/mamba/ |
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| + | # git clone https://github.com/ESMValGroup/ESMValTool |
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| + | # cd ESMValTool/ |
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| + | # /opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba env create -f environment.yml --name esmvaltool |
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| + | </PRE> |
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| + | |||
| + | Activando el entorno y terminando la instalación |
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| + | <PRE style="shell"> |
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| + | # eval "$(/opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba shell hook --shell bash)" |
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| + | # mamba activate esmvaltool |
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| + | (esmvaltool) # pip install --editable '.[develop]' |
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| + | (esmvaltool) # pre-commit install |
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| + | </PRE> |
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| + | |||
| + | La instalación de Julia falla |
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| + | <PRE style="shell"> |
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| + | (esmvaltool) # esmvaltool install Julia |
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| + | </PRE> |
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| + | |||
| + | Activación kernel para jupyterHUB |
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| + | <PRE style="shell"> |
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| + | # pip3 install ipykernel |
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| + | # mamba deactivate |
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| + | # /opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin/python3 -m ipykernel install |
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| + | # /opt/tljh/user/bin/jupyter-kernelspec install /usr/local/share/jupyter/kernels/python3 |
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| + | --name=python_esmvaltools |
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| + | # /opt/tljh/user/bin/jupyter-kernelspec list |
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| + | Available kernels: |
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| + | python3 /opt/tljh/user/share/jupyter/kernels/python3 |
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| + | bash /usr/local/share/jupyter/kernels/bash |
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| + | ir /usr/local/share/jupyter/kernels/ir |
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| + | python_atrackcs /usr/local/share/jupyter/kernels/python_atrackcs |
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| + | python_digearth-hack /usr/local/share/jupyter/kernels/python_digearth-hack |
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| + | python_esmvaltools /usr/local/share/jupyter/kernels/python_esmvaltools |
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| + | </PRE> |
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| + | |||
| + | Editando acceso a kernel para acerlo más identificable |
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| + | <PRE style="shell"> |
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| + | # vim /usr/local/share/jupyter/kernels/python_esmvaltools/kernel.json |
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| + | (...) |
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| + | "display_name": "Python 3 (esmvaltools)", |
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| + | "env": { |
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| + | "MAMBA_PREFIX":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool", |
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| + | "MAMBA_DEFAULT_ENV":"esmvaltool", |
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| + | "PATH":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin:/opt/conda/mamba/DE-global_hackathon/ |
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| + | miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin", |
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| + | "ESMFMKFILE": "/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/lib/esmf.mk" |
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| + | }, |
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| + | </PRE> |
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| + | |||
| + | Preparando configuración |
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| + | <PRE style="shell"> |
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| + | (esmvaltool) # esmvaltool config get_config_user |
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| + | </PRE> |
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| + | |||
| + | La ejecución en Deimos falla, ya creé un issue en el GIThub de ESMValTool [https://github.com/ESMValGroup/ESMValCore/issues/2739 #2739] |
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Revisión de 16:26 28 mayo 2025
Instalación de ESMValTool en papa-deimos
A continuación se detallan los pasos seguidos para la instalación en papa-deimos de la herramienta ESMValTool.
Se siguen los pasos encontrados en esta página ESMValTool-JupyterLab.
# cd /opt/conda/mamba/ # git clone https://github.com/ESMValGroup/ESMValTool # cd ESMValTool/ # /opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba env create -f environment.yml --name esmvaltool
Activando el entorno y terminando la instalación
# eval "$(/opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba shell hook --shell bash)" # mamba activate esmvaltool (esmvaltool) # pip install --editable '.[develop]' (esmvaltool) # pre-commit install
La instalación de Julia falla
(esmvaltool) # esmvaltool install Julia
Activación kernel para jupyterHUB
# pip3 install ipykernel # mamba deactivate # /opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin/python3 -m ipykernel install # /opt/tljh/user/bin/jupyter-kernelspec install /usr/local/share/jupyter/kernels/python3 --name=python_esmvaltools # /opt/tljh/user/bin/jupyter-kernelspec list Available kernels: python3 /opt/tljh/user/share/jupyter/kernels/python3 bash /usr/local/share/jupyter/kernels/bash ir /usr/local/share/jupyter/kernels/ir python_atrackcs /usr/local/share/jupyter/kernels/python_atrackcs python_digearth-hack /usr/local/share/jupyter/kernels/python_digearth-hack python_esmvaltools /usr/local/share/jupyter/kernels/python_esmvaltools
Editando acceso a kernel para acerlo más identificable
# vim /usr/local/share/jupyter/kernels/python_esmvaltools/kernel.json
(...)
"display_name": "Python 3 (esmvaltools)",
"env": {
"MAMBA_PREFIX":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool",
"MAMBA_DEFAULT_ENV":"esmvaltool",
"PATH":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin:/opt/conda/mamba/DE-global_hackathon/
miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
"ESMFMKFILE": "/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/lib/esmf.mk"
},
Preparando configuración
(esmvaltool) # esmvaltool config get_config_user
La ejecución en Deimos falla, ya creé un issue en el GIThub de ESMValTool #2739
