Diferencia entre revisiones de «/ESMValToolInst»
| (No se muestran 5 ediciones intermedias del mismo usuario) | |||
| Línea 29: | Línea 29: | ||
# mamba deactivate | # mamba deactivate | ||
# /opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin/python3 -m ipykernel install | # /opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin/python3 -m ipykernel install | ||
# /opt/tljh/user/bin/jupyter-kernelspec install /usr/local/share/jupyter/kernels/python3 --name=python_esmvaltools | # /opt/tljh/user/bin/jupyter-kernelspec install /usr/local/share/jupyter/kernels/python3 | ||
--name=python_esmvaltools | |||
# /opt/tljh/user/bin/jupyter-kernelspec list | # /opt/tljh/user/bin/jupyter-kernelspec list | ||
Available kernels: | Available kernels: | ||
| Línea 43: | Línea 44: | ||
<PRE style="shell"> | <PRE style="shell"> | ||
# vim /usr/local/share/jupyter/kernels/python_esmvaltools/kernel.json | # vim /usr/local/share/jupyter/kernels/python_esmvaltools/kernel.json | ||
(...) | |||
"display_name": "Python 3 (esmvaltools)", | "display_name": "Python 3 (esmvaltools)", | ||
"env": { | "env": { | ||
| Línea 48: | Línea 50: | ||
"MAMBA_DEFAULT_ENV":"esmvaltool", | "MAMBA_DEFAULT_ENV":"esmvaltool", | ||
"PATH":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin:/opt/conda/mamba/DE-global_hackathon/ | "PATH":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin:/opt/conda/mamba/DE-global_hackathon/ | ||
miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" | miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin", | ||
"ESMFMKFILE": "/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/lib/esmf.mk" | |||
}, | }, | ||
</PRE> | </PRE> | ||
Preparando configuración | |||
<PRE style="shell"> | |||
(esmvaltool) # esmvaltool config get_config_user | |||
</PRE> | |||
La ejecución en Deimos falla, ya creé un issue en el GIThub de ESMValTool [https://github.com/ESMValGroup/ESMValCore/issues/2739 #2739] | |||
Revisión del 19:26 28 may 2025
Instalación de ESMValTool en papa-deimos
A continuación se detallan los pasos seguidos para la instalación en papa-deimos de la herramienta ESMValTool.
Se siguen los pasos encontrados en esta página ESMValTool-JupyterLab.
# cd /opt/conda/mamba/ # git clone https://github.com/ESMValGroup/ESMValTool # cd ESMValTool/ # /opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba env create -f environment.yml --name esmvaltool
Activando el entorno y terminando la instalación
# eval "$(/opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba shell hook --shell bash)" # mamba activate esmvaltool (esmvaltool) # pip install --editable '.[develop]' (esmvaltool) # pre-commit install
La instalación de Julia falla
(esmvaltool) # esmvaltool install Julia
Activación kernel para jupyterHUB
# pip3 install ipykernel # mamba deactivate # /opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin/python3 -m ipykernel install # /opt/tljh/user/bin/jupyter-kernelspec install /usr/local/share/jupyter/kernels/python3 --name=python_esmvaltools # /opt/tljh/user/bin/jupyter-kernelspec list Available kernels: python3 /opt/tljh/user/share/jupyter/kernels/python3 bash /usr/local/share/jupyter/kernels/bash ir /usr/local/share/jupyter/kernels/ir python_atrackcs /usr/local/share/jupyter/kernels/python_atrackcs python_digearth-hack /usr/local/share/jupyter/kernels/python_digearth-hack python_esmvaltools /usr/local/share/jupyter/kernels/python_esmvaltools
Editando acceso a kernel para acerlo más identificable
# vim /usr/local/share/jupyter/kernels/python_esmvaltools/kernel.json
(...)
"display_name": "Python 3 (esmvaltools)",
"env": {
"MAMBA_PREFIX":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool",
"MAMBA_DEFAULT_ENV":"esmvaltool",
"PATH":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin:/opt/conda/mamba/DE-global_hackathon/
miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
"ESMFMKFILE": "/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/lib/esmf.mk"
},
Preparando configuración
(esmvaltool) # esmvaltool config get_config_user
La ejecución en Deimos falla, ya creé un issue en el GIThub de ESMValTool #2739