Revisión de 16:26 28 mayo 2025

Instalación de ESMValTool en papa-deimos

A continuación se detallan los pasos seguidos para la instalación en papa-deimos de la herramienta ESMValTool.

Se siguen los pasos encontrados en esta página ESMValTool-JupyterLab.

# cd /opt/conda/mamba/
# git clone https://github.com/ESMValGroup/ESMValTool
# cd ESMValTool/
# /opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba env create -f environment.yml --name esmvaltool

Activando el entorno y terminando la instalación

# eval "$(/opt/conda/mamba/DE-global_hackathon/miniconda3/bin/mamba shell hook --shell bash)"
# mamba activate esmvaltool
(esmvaltool) # pip install --editable '.[develop]'
(esmvaltool) # pre-commit install

La instalación de Julia falla

(esmvaltool) # esmvaltool install Julia

Activación kernel para jupyterHUB

# pip3 install ipykernel
# mamba deactivate
# /opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin/python3 -m ipykernel install
# /opt/tljh/user/bin/jupyter-kernelspec install /usr/local/share/jupyter/kernels/python3 
  --name=python_esmvaltools
# /opt/tljh/user/bin/jupyter-kernelspec list
Available kernels:
  python3                 /opt/tljh/user/share/jupyter/kernels/python3
  bash                    /usr/local/share/jupyter/kernels/bash
  ir                      /usr/local/share/jupyter/kernels/ir
  python_atrackcs         /usr/local/share/jupyter/kernels/python_atrackcs
  python_digearth-hack    /usr/local/share/jupyter/kernels/python_digearth-hack
  python_esmvaltools      /usr/local/share/jupyter/kernels/python_esmvaltools

Editando acceso a kernel para acerlo más identificable

# vim /usr/local/share/jupyter/kernels/python_esmvaltools/kernel.json
(...)
 "display_name": "Python 3 (esmvaltools)",
 "env": {
  "MAMBA_PREFIX":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool",
  "MAMBA_DEFAULT_ENV":"esmvaltool",
  "PATH":"/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/bin:/opt/conda/mamba/DE-global_hackathon/
miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
  "ESMFMKFILE": "/opt/conda/mamba/DE-global_hackathon/miniconda3/envs/esmvaltool/lib/esmf.mk"
 },

Preparando configuración

(esmvaltool) # esmvaltool config get_config_user

La ejecución en Deimos falla, ya creé un issue en el GIThub de ESMValTool #2739