ORcompDCAO DCAO

Compilation at DCAO's computational classroom

Installation steps using modipsl

• Go to the installation directory [INSTALLDIR] (for hydra [INSTALLDIR]=/share)

$ cd [INSTALLDIR]

• Getting the IPSL-models suite

$ svn co https://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl

• Going to the util folder:

$ cd modipsl/util

• Getting the off-line version of ORCHIDEE

$ ./model ORCHIDEE_trunk >& run_get_model.log

• We got some issues with the ports, thus, it needs to be manually done:

$ cd ../modeles

• Getting IOIPSL:

$ mkdir -p IOIPSL/src 
$ svn co https://forge.ipsl.jussieu.fr/igcmg/svn/IOIPSL/tags/v2_2_2/src IOIPSL/src

• Getting XIOS library

$ svn co -r 1043 https://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/trunk XIOS

• By the end one should have:

$ ls
IOIPSL  ORCHIDEE  XIOS

• Going back to util to proceed

$ cd ../util

• These are the final versions of the codes
  • ORCHIDEE: 4622
  • ORCHIDEE_OL: 4622
  • IOIPSL: 3379
  • XIOS: 1043
• Preparing compilation environment for hydra. One need to add into AA_make.gdef specifications for hydra (at the end of file):

#-Q- ifort_hydra   #- Global definitions for hydra, ifort
#-Q- ifort_hydra LIB_MPI = MPI1
#-Q- ifort_hydra LIB_MPI_BIS = MPI1
#-Q- ifort_hydra FCM_ARCH = ifort_hydra
#-Q- ifort_hydra   M_K = make
#-Q- ifort_hydra   P_C = cpp
#-Q- ifort_hydra   P_O = -P -C -traditional $(P_P)
#-Q- ifort_hydra   F_C = /usr/local/bin/mpif90 -c -cpp
#-Q- ifort_hydra   #-D- MD    F_D = -g
#-Q- ifort_hydra   #-D- MN    F_D =
#-Q- ifort_hydra   #-P- I4R4  F_P = -i4
#-Q- ifort_hydra   #-P- I4R8  F_P = -i4 -r8
#-Q- ifort_hydra   #-P- I8R8  F_P = -i8 -r8
#-Q- ifort_hydra   F_O = -DCPP_PARA -O3 $(F_D) $(F_P) -I$(MODDIR) -module $(MODDIR) -fp-model precise
#-Q- ifort_hydra   F_L = /usr/local/bin/mpif90
#-Q- ifort_hydra   M_M = 0
#-Q- ifort_hydra   L_X = 0
#-Q- ifort_hydra   L_O =
#-Q- ifort_hydra   A_C = ar -rs
#-Q- ifort_hydra   A_G = ar -x
#-Q- ifort_hydra   C_C = cc -c
#-Q- ifort_hydra   C_O =
#-Q- ifort_hydra   C_L = cc
#-Q- ifort_hydra   #-
#-Q- ifort_hydra   NCDF_INC = /usr/local/include
#-Q- ifort_hydra   NCDF_LIB = -L/usr/local/lib -lnetcdf -lnetcdff
#-Q- ifort_hydra  #-

• Creation of the configuration \verb+arch+ files for the compilation of each component
• XIOS
  • going there:

$ cd ../modeles/XIOS/arch

• • Using CICLAD's ifort compilation as reference

$ cp arch-ifort_CICLAD.fcm arch-ifort_hydra.fcm

• • Adapting values (following ifort bug issue for version 12.0.3, ifort bug):

%CCOMPILER           /usr/local/bin/mpicc 
%FCOMPILER           /usr/local/bin/mpif90 
%LINKER        /usr/local/bin/mpif90 -nofor-main

%BASE_CFLAGS    -std=c++0x 
%PROD_CFLAGS    -O3 -D BOOST_DISABLE_ASSERTS 
%DEV_CFLAGS     -g -traceback 
%DEBUG_CFLAGS   -DBZ_DEBUG -g -traceback -fno-inline 

%BASE_FFLAGS    -D__NONE__
%PROD_FFLAGS    -O3 
%DEV_FFLAGS     -g -O2 -traceback 
%DEBUG_FFLAGS   -g -traceback 

%BASE_INC       -D__NONE__
%BASE_LD        -lstdc++ 

%CPP            /usr/local/bin/mpicc -EP 
%FPP            cpp -P 
%MAKE           gmake

• • Getting paths:

$ cp arch-ifort_CICLAD.path arch-ifort_hydra.path

• • Adapting values:

NETCDF_INCDIR="-I/usr/local/include" 
NETCDF_LIBDIR="-L/usr/local/lib" 
NETCDF_LIB="-lnetcdf -lnetcdff" 
MPI_INCDIR="" 
MPI_LIBDIR="" 
MPI_LIB="" 
HDF5_INCDIR="" 
HDF5_LIBDIR="" 
HDF5_LIB=""

• ORCHIDEE
  • Going there

$ cd ../../ORCHIDEE/arch

• • Using CICLAD's ifort compilation as reference

$ cp arch-ifort_CICLAD.fcm arch-ifort_hydra.fcm

• • Adapting values:

%COMPILER            /usr/local/bin/mpif90 
%LINK                /usr/local/bin/mpif90
%AR                  ar 
%MAKE                gmake
%FPP_FLAGS           -P -traditional
%FPP_DEF
%BASE_FFLAGS         -i4 -r8 -fp-model precise 
%PROD_FFLAGS         -O3 
%DEV_FFLAGS          -g -O2 -traceback -fp-stack-check -ftrapuv -check bounds 
%DEBUG_FFLAGS        -fpe0 -O0 -g -traceback -fp-stack-check -ftrapuv -check bounds -check all
%MPI_FFLAGS 
%OMP_FFLAGS          -openmp -openmp-threadprivate compat
%BASE_LD             -i4 -r8
%MPI_LD 
%OMP_LD              -openmp

• • getting paths

$ cp arch-ifort_CICLAD.path arch-ifort_hydra.path

• • Adapting values:

NETCDF_LIBDIR="/usr/local/lib -lnetcdf -lnetcdff -lstdc++" 
NETCDF_INCDIR=/usr/local/include 
IOIPSL_INCDIR=../../../lib
IOIPSL_LIBDIR=../../../lib 
XIOS_INCDIR=${ORCHDIR}/../XIOS/inc 
XIOS_LIBDIR="${ORCHDIR}/../XIOS/lib -lxios"

• • Going back to util to proceed

$ cd ../../../util

• • Installing the code:

$ ./ins_make -t ifort_hydra >& run_ins_make.log

• • Going there:

$ cd ../config/ORCHIDEE_OL

• • No need to loading the right environment since in hydra its by default
  • Compiling XIOS in sequential (in Makefile, adding no-parallel compilation):

./make_xios --netcdf_lib netcdf4_seq (...)

• • Compiling:

$ gmake >& run_gmake.log

• • Checking if everything went fine:

$ cat -n run_gmake.log | grep Error
$ cat -n run_gmake.log | grep undefined
$ ls ../../bin/ 
orchidee_ol  xios_server.exe