CESMInstall WIKI CESM - hydra

Downloading CESM2

Following CESM2 Quick Start Guide and CESM2 github instructions.

Cloning the code:

git clone -b release-cesm2.2.2 git@github.com:ESCOMP/CESM.git my_cesm_sandbox

This will create a directory my_cesm_sandbox/ in your current working directory.

We got the following

$ cd my_cesm_sandbox/
$ ls
ChangeLog           CODE_OF_CONDUCT.md  Externals.cfg       manage_externals
ChangeLog_template  describe_version    Externals_cime.cfg  README.rst
cime_config         doc                 LICENSE.txt

Verifying that installation was fine:

$ ./manage_externals/checkout_externals
$ ls 
ChangeLog           CODE_OF_CONDUCT.md  Externals.cfg       README.rst
ChangeLog_template  components          Externals_cime.cfg
cime                describe_version    LICENSE.txt
cime_config         doc                 manage_externals

Defining the compilation / installation

Machine

We need to create the configuration for hydra. For that purpose we are going to use the exampled configuration for "centos7-linux" from file

cime/config/cesm/machines/config_machines.xml

. This is its content:

  <machine MACH="hydra">
    <DESC>
      Example port to CIMA's hydra
    </DESC>
    <NODENAME_REGEX>node</NODENAME_REGEX>
    <OS>LINUX Debian</OS>
    <PROXY> https://howto.get.out </PROXY>
    <COMPILERS>gnu</COMPILERS>
    <MPILIBS>mpich</MPILIBS>
    <PROJECT>none</PROJECT>
    <SAVE_TIMING_DIR> </SAVE_TIMING_DIR>
    <CIME_OUTPUT_ROOT>$ENV{HOME}/cesm/scratch</CIME_OUTPUT_ROOT>
    <DIN_LOC_ROOT>/share/cesm/inputdata</DIN_LOC_ROOT>
    <DIN_LOC_ROOT_CLMFORC>/share/cesm/inputdata/lmwg</DIN_LOC_ROOT_CLMFORC>
    <DOUT_S_ROOT>$ENV{HOME}/cesm/archive/$CASE</DOUT_S_ROOT>
    <BASELINE_ROOT>$ENV{HOME}/cesm/cesm_baselines</BASELINE_ROOT>
    <CCSM_CPRNC>$ENV{HOME}/cesm/tools/cime/tools/cprnc/cprnc</CCSM_CPRNC>
    <GMAKE>make</GMAKE>
    <GMAKE_J>8</GMAKE_J>
    <BATCH_SYSTEM>pbs</BATCH_SYSTEM>
    <SUPPORTED_BY>soporte@cima.fcen.uba.ar</SUPPORTED_BY>
    <MAX_TASKS_PER_NODE>128</MAX_TASKS_PER_NODE>
    <MAX_MPITASKS_PER_NODE>128</MAX_MPITASKS_PER_NODE>
    <PROJECT_REQUIRED>FALSE</PROJECT_REQUIRED>
    <mpirun mpilib="impi">
      <executable>mpiexec</executable>
      <arguments>
        <arg name="ntasks"> -np {{ total_tasks }} </arg>
      </arguments>
    </mpirun>
    <environment_variables>
      <env name="OMP_STACKSIZE">256M</env>
    </environment_variables>
    <resource_limits>
      <resource name="RLIMIT_STACK">-1</resource>
    </resource_limits>
  </machine>

Work-flow

configuration of the work-flow is done via the file

config_batch.xml

http://esmci.github.io/cime/versions/master/html/users_guide/machine.html

Porting and validating CIME on a new platform

http://esmci.github.io/cime/versions/master/html/users_guide/porting-cime.html

Downloading the Input data

All input data will be downloaded in

/share/cesm

Input datasets are needed to run the model. CESM input data are available through a separate Subversion input data repository.

• Change check_input_data header so it runs with Python 2.7.x version:

sed -i -e 's!/usr/bin/env python!/share/anaconda2/bin/python!' ./cime/scripts/Tools/check_input_data